PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g02220.1
Common NameLR48_Vigan11g085800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 239aa    MW: 25777.8 Da    PI: 5.1777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g02220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-184797155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Vang10g02220.1 47 PVYRGVRMRA-WGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALAIKG 97
                    68*****998.**********854...59**********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-124797IPR001471AP2/ERF domain
SMARTSM003803.0E-3648111IPR001471AP2/ERF domain
PROSITE profilePS5103223.02448105IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2148106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-3248106IPR001471AP2/ERF domain
PRINTSPR003672.3E-104960IPR001471AP2/ERF domain
CDDcd000181.09E-3149107No hitNo description
PRINTSPR003672.3E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDVVAKSAPK ESSSSASTRK HSSPEAHLAG PDHKKPKQAR DSSSKHPVYR GVRMRAWGKW  60
VSEIREPRKK NRIWLGTFAT AEMAARAHDV AALAIKGNSA ILNFPELAGS LPRPDSNSPR  120
DVQVAAAKAA AMEVMDPPTT PSWTLSQSSS SSSGETSTAD ELGEIVELPS LGTSLEIPER  180
SEEVVFVEPV GGWLYSEAWC DGIYGDRECG GYFIGDEISM QESESMILCG FEGSLWQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1649105360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507437.11e-147PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-55DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0L9VRX71e-167A0A0L9VRX7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QX081e-167A0A0S3QX08_PHAAN; Uncharacterized protein
STRINGGLYMA08G03910.19e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-51ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]